MARTi - Metagenomic Analysis in Real Time

MARTi is a software package designed for performing real-time analysis of metagenomic samples using nanopore sequencing. If you’re not working in real-time, MARTi may still be a quick and easy analysis solution for you. And if you’re not using nanopore sequencing, you may still benefit from using MARTi to analyse your data.

You can try out the MARTi browser interface at http://marti.cyverseuk.org.

MARTi is open source software supplied under an MIT license. See the GitHub for more details.

Getting MARTi

First of all, read the Introduction to understand how MARTi fits together.

Next head to Installation overview to choose the best way to install MARTi for your system.

MARTi runs on Linux and on macOS. At the moment, Windows is not supported.

Papers

The MARTi paper can be found at Genome Research. If you use MARTi, please cite this in any relevant publications.

Talks and posters

• Richard Leggett’s talk at London Calling 2021.

Follow us

You can follow MARTi updates on Bluesky @martisoftware.bsky.social or Twitter @MARTiSoftware.