Change history

Version 0.9.33 (11 June 2026)

Added new NCBI ranks for domain, realm, cellular root, acellular root.
Writes tree at 0.05% abundance in addition to 0, 0.1, 1, 2.
Corrected bug on parsing CARD accessions.
Early support for AI integration (inaccessible to the user at this point).

Version 0.9.31 (7 Nov 2025)

Fixed bug with obtaining Kraken version.

Version 0.9.30 (19 Oct 2025)

Fixed bug with amr.json generation.

Version 0.9.29 (5 Seo 2025)

Added TaxaFilter and Options to Centrifuge.

Version 0.9.27 (9 Jul 2025)

Changes/bug fixes to continuation code.

Version 0.9.26 (30 Jun 2025)

Now aborts when Kraken2 or Centrifuge jobs fail.

Version 0.9.25 (25 Jun 2025)

Removed repeated alerts.

Version 0.9.23 (19 Feb 2025)

Added alerts.json file generation to back-end.

Version 0.9.22 (16 Feb 2025)

Added ability to continue from aborted position.
Removed need for marti_engine_options.txt file.
Reads filtered through LCAMinReadLength are now marked as unclassified.
Better reporting of SLURM errors.
GUI updates and fixes.

Version 0.9.20 (23 Jan 2025)

GUI updates and fixes.
Added LCAMinReadLength option.

Version 0.9.18 (17 Oct 2024)

New map view in samples view.
Changes to default options.
Minor changes to job handling on SLURM (e.g. naming)

Version 0.9.16 (1 Mar 2024)

Added DIAMOND support.
Various GUI updates.

Version 0.9.15 (30 Nov 2023)

Centrifuge support.
Metadata support.
Support for abundance by base pairs rather than read count.
Better default values for parameters and updated documentation to match.
LCALimitToSpecies option added and turned off by default (was previously turned on).
Changed error handling so that MARTi only warns when errors appear in the BLAST log. Only stops running if SLURM return code is an error.
Removed some legacy code.
New GUI options in marti_engine_options.

Version 0.9.14 (16 Jun 2023)

First release with SLURM support.