Installation with bioconda
This page describes how to install MARTi with mamba
, a CLI tool to manage conda environments.
Install Mamba
The recommended method for installing mamba is to install miniforge.
On macOS, you can install miniforge with Homebrew by running:
brew install miniforge
For other methods, see here.
Channel configuration
Once you’ve installed miniforge, you need to run the following commands to configure the conda channels:
conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge
conda config --set channel_priority strict
Install MARTi
Create a new environment called marti and install MARTi:
mamba create -n marti marti
Activate the marti environment:
mamba activate marti
You should now be able to use the marti
and marti_gui
commands!