MARTi - Metagenomic Analysis in Real Time

MARTi is a software package designed for performing real-time analysis of metagenomic samples using nanopore sequencing. If you’re not working in real-time, MARTi may still be a quick and easy analysis solution for you. And if you’re not using nanopore sequencing, you may still benefit from using MARTi to analyse your data.

You can try out the MARTi browser interface at

Getting MARTi

First of all, read the Introduction to understand how MARTi fits together.

Next head to Installation overview to choose the best way to install MARTi for your system.

MARTi runs on Linux and on macOS. At the moment, Windows is not supported.


Coming soon.

Talks and posters

Follow us

You can follow MARTi updates on twitter @MARTiSoftware.

Or if you would like to be on a MARTi mailing list to receive information about updates, please email