MARTi - Metagenomic Analysis in Real Time

MARTi is a software package designed for performing real-time analysis of metagenomic samples using nanopore sequencing. If you’re not working in real-time, MARTi may still be a quick and easy analysis solution for you. And if you’re not using nanopore sequencing, you may still benefit from using MARTi to analyse your data.

You can try MARTi out at http://marti.cyverseuk.org.

MARTi runs on Linux and on macOS. At the moment, Windows is not supported.

Note

The current version of MARTi is for beta testing purposes and the following are not yet fully implemented:

* Full SLURM support - you can run on an HPC (SLURM or otherwise), but you are restricted to the resources of the HPC node that the MARTi back-end runs on.

* Centrifuge support - currently only BLAST-based analysis is supported.

Getting MARTi

MARTi is available from GitHub - see Download and installation for details.

Papers

Coming soon.

Talks and posters

• Richard Leggett’s talk at London Calling 2021.

Follow us

You can follow MARTi updates on twitter @MARTiSoftware.

Or if you would like to be on a MARTi mailing list to receive information about updates, please email richard.leggett@earlham.ac.uk.